Microbes & Data

Lycoming College Culture Collection

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Whole Genomes
rRNA & Individual Genes

Microbes

- Chryseobacterium piperi CTM-Named in honor of Dr. John F. Piper Jr. Dean of Lycoming College
- Discovered by Chris Mason in Microbiology Spring 2006
- Studied by Kellie Cicconi & Pat Hayes in research methods 2007
- Characterized by Brittane Strahan with reference species in Summer 2008
- MLST by K.C. Failor in Summer 2010
- Data integration & polishing by Allison Batties 2010
- Published in IJSEM Sept 2011
- Genome sequenced, assembled, & deposited by Shannon Pipes & Samantha Stropko, Summer 2014

Whole Genomes

species strain WGS  genome size contigs
Acinetobacter schindleri DRN QCWW 3,157,970 105
Acinetobacter sp. AM AM QETG 3,411,436 59
Bacillus acidiceler NRRL B-41736 NCSZ 4,783,870 69
Bacillus indicus (was cibi) DSM 16189 JNVC 4,072,175 24
Bacillus indicus LMG 22858 JGVU 4,129,127 22
Bacillus luciferensis DSM 18845 NCTA 4,426,802 90
Bacillus sp EAC EAC NCSY 4,330,675 28
Bacillus sp SJS (colbertis) SJS JAQV 4,148,893 46
Chryseobacterium angstadtii KM LFND 5,202,773 11
Chryseobacterium aquaticum KCTC 12483 LLYZ 3,813,178 21
Chryseobacterium elymi KCTC 22547 QNUH 4,591,259 80
Chryseobacterium flavum KCTC 12877 QNUE 4,470,829 40
Chryseobacterium formosense LMG 24722 JPRP 4,364,663 10
Chryseobacterium greenlandense UMB34 LMAI 4,036,521 21
Chryseobacterium hispalense DSM 25574 JARQ 4,363,762 27
Chryseobacterium hispanicum KCTC 22108 QNUG 3,777,625 148
Chryseobacterium lathyri KCTC 22544 QNFY 4,857,652 56
Chryseobacterium luteum DSM 18605 JPRO 4,718,546 49
Chryseobacterium massiliae CCUG 51329 QNVU 4,409,139 116
Chryseobacterium oleae JM1 JPRN 5,256,156 31
Chryseobacterium piperi CTM JPRJ 4,340,594 89
Chryseobacterium piscium CCUG 51928 QNVS 4,319,594 158
Chryseobacterium rhizosphaerae KCTC 22548 QNUF 5,267,751 98
Chryseobacterium soli DSM 19298 JPRH 4,754,478 26
Chryseobacterium sp 1_F178 (Hugo Lab) 1_F178 QNVT 6,187,872 88
Chryseobacterium sp 5_R23647 (Hugo Lab) 5_R23647 QNVW 4,679,115 91
Chryseobacterium sp 7_F195 (Hugo Lab) 7_F195 QNVV 4,796,535 61
Chryseobacterium sp BLS98 BLS98 LFNF 4,412,600 8
Chryseobacterium sp FH2 FH2 LFNE 3,988,758 24
Chryseobacterium sp JAH JAH LMAH 3,874,551 16
Chryseobacterium vrystaatense LMG 22846 JPRI 5,487,842 18
Sej./Chryseo./Kaistella antarcticum LMG 24720 JPEP 3,123,663 4
Sej./Chryseo./Kaistella jeonii DSM 17048 JSYL 3,261,282 35
Chryseo./Kaistella haifense DSM 19056 JASZ 2,845,737 96
Chryseo./Kaistella solincola DSM 22468 JSYK 2,345,236 14
Kaist./Chryseo./Kaistella koreensis CCUG 49689 LFNG 3,154,203 64
Kaistella sp. JJC (zaccaria) JJC NHOS 2,841,126 8
Comamonas sp JNW JNW QETI 4,972,022 39
Epilithonimonas sp FH1 (diehli) FH1 JPLZ 3,975,884 12
Epilithonimonas lactis LMG 24401 JPLY 4,236,390 22
Flavobacterium aquatile LMG 4008 JRHH 3,490,856 7
Flavobacterium chilense LMG 26360 LSYT 5,924,510 21
Flavobacterium chungangense LMG 26729 JASY 5,591,549 45
Flavobacterium hibernum DSM 12611 JPRK 5,283,672 30
Flavobacterium hydatis DSM 2063 JPRM 5,877,671 99
Flavobacterium reichenbachii LMG 25512 JPRL 5,501,401 12
Flavobacterium sp. ABG (douthatii) ABG LEKS 5,270,010 89
Flavobacterium sp AED (franzi) AED JSYM 3,925,153 15
Flavobacterium sp AJR AJR NCWQ 3,925,153 15
Flavobacterium sp CRH CRH LMAJ 5,828,735 92
Flavobacterium sp HTF HTF QETH 5,140,580 187
Flavobacterium sp JRM JRM JYSO 5,380,719 169
Flavobacterium sp KJJ KJJ JARP 4,603,121 10
Flavobacterium sp KMS KMS JSYP 5,597,129 58
Flavobacterium sp NLM NLM LIAC 5,620,987 44
Flavobacterium sp VMW (clonal w/NLM) VMW LHVT 5,627,095 59
Flavobacterium sp WLB WLB QCWV 5,490,360 211
Flavobacterium succinicans LMG 10402 JATV 3,652,806 48
Meiothermus sp pnk-1 (centralius) pnk-1 QKOB 3,511,473 36
Pedobacter borealis DSM 19626 JAUG 5,544,917 216
Pedobacter ginsenosidimutans KACC 14530 LMZQ 6,517,553 86
Pedobacter kyungheensis KACC 16221 JSYN 6,358,642 67
Pedobacter sp 20-19 R20-19 JCKI 5,006,523 15
Pedobacter sp. AJM AJM NHOT 4,881,645 28
Pedobacter sp. BMA BMA LECU 5,040,634 20
Pseudomonas sp. NDM NDM QETJ 5,906,836 337
Pseudomonas sp. SDI SDI QETK 4,840,575 74
Stenotrophomonas sp. SPM SPM QETL 4,330,941 s

Individual rRNA and Protein Coding Genes

organism 16srRNA gyrB rpoB groEL recA
Bacillus sp. SJS KF648279
Chryseobacterium angstadtii KM EU999734 JX293142 JX293134
Chryseobacterium aquaticum KCTC 12483 JX293124 JX293150
Chryseobacterium greenlandense UMB10 JX293161 JX293151 JX293125
Chryseobacterium greenlandense UMB34 JX293162 JX293152 JX293126
Chryseobacterium haifense DSM 19056 JX293168 JX293171 JX293165
Chryseobacterium jejuense DSM 19299 JX293160 JX293153 JX293127
Chryseobacterium joostei LMG 18212 JX293149 JX293128
Chryseobacterium koreense CCUG 49689 JX293167 JX293170 JX293164
Chryseobacterium luteum DSM 18605 JX293146 JX293129
Chryseobacterium oranimense LMG 24030 JX293147
Chryseobacterium piperi CTM EU999735 JX293154 JX293130
Chryseobacterium shigense DSM 17126 NR_118006 JX293144 JX293132
Chryseobacterium soldanellicola DSM 17072 JX293155 JX293131
Chryseobacterium soli DSM 19298 JX293148
Chryseobacterium solincola DSM 22468 JX293156
Chryseobacterium sp. JM1 JX293122 JX293163 JX293136
Chryseobacterium vrystaatense LMG 22846 JX293143 JX293135
Comamonas aquatica LMG 6112 JX443522
Comamonas kerstersii LMG 5324 JX443524
Comamonas nitrativorans 23310 JX443528
Comamonas sp. SJM HM140707 JX443527
Comamonas terrigena B-781 JX443525
Enterobacteriaceae bacterium AAY2D1 KC119219
Enterobacteriaceae bacterium JML KC119218
Enterobacteriaceae bacterium R20-29 KC119220
Enterococcus sp. JB EU852096
Epilithonimonas lactis DSM 19221 JX293157 JX293140 JX293138
Epilithonimonas sp. FH1 JX293123 JX293159 JX293139
Epilithonimonas tenax DSM 16811 JX293158 JX293141 JX293137
Flavobacteriaceae bacterium BLS-98 FJ169958 JX293145 JX293133
Flavobacteriaceae bacterium JJC EU523664 JX293169 JX293172 JX293166
Flavobacterium sp. ABG KF648282
Flavobacterium sp. AED KF648281
Flavobacterium sp. JRR KC119216
Flavobacterium sp. KJJ KC119215
Flavobacterium sp. R30-29 KC119217
Flavobacterium sp. R30-53 KF648280
Iodobacter sp. 20-09 KC119221
Lysinibacillus xylanilyticus SLS HM068365
Moraxellaceae bacterium MAG EU845778
Pedobacter sp. R20-19 KC119213
Pedobacter yonginense R20-25 KC119214
Planococcus sp. JDN GU732188
Pseudomonas jessenii AA30-08 HM068366
Yersinia sp. MAC HM136791
Chryseobacterium sp. JAH KU855373
Flavobacterium sp. CRH KU837227
Pedobacter sp. BMA KU707920
Chryseobacterium sp. FH2 KU736794