Presentations & Research Posters

BISMiS 2016 - Pune, India September 12-15, 2016

Thank you very much to alumni and friends who donated to make this trip possible!

  • Jeffrey D. Newman
        Integration of Average Amino Acid Identity (AAI) And Percentage of Orthologous Genes (BBH) in a Single Phylogenomic Metric, The Reciprocal OrthologyScore Average (ROSA).

  • Kyle T. Jacobs, Jessica Hoffman & Jeffrey D. Newman
        Genomic and phenotypic characterization of Epilithonimonas diehli sp. nov., from a freshwater creek
        Student travel sponsored by David Wilson('00)

  • Jacob R. Miller, Emily Barger, Abigail K. Smith, Kati Stankovich & Jeffrey D. Newman
        Two Novel Flavobacteriaceae Isolated from a Freshwater Creek
        Student travel sponsored by Philip('77) & Patricia('74) Courtright

  • Victoria Wilson, Nicole Marianelli & Jeffrey D. Newman
        A Novel Flavobacteriaceae Isolated From A Freshwater Creek
        Student travel sponsored by Joseph('99) & Anna('01) Keane

  • Emily Carson, Dillon Snyder & Jeffrey D. Newman
        Novel Sphingobacteriaceae Related to Pedobacter agri Isolated from a Freshwater Creek
        Student travel sponsored by Martin & Sheryl Marcinko

  • Devin Frantz, Jesse Clayton, Jordan Krebs & Jeffrey D. Newman
        Reinstatement of the Genus Kaistella
        Student travel sponsored by Tyler Marcinko('08) & Peter Via('08)
  • ASM 2016 - Boston June 16-June 20, 2016

  • Jeff Newman
        A Framework for Publishing Novel Bacterial Species Discovered in the Undergraduate Microbiology Lab

  • Kirsten Fischer, Kathy Jacobs, Caitlin Dougherty & Jeff Newman
        Genomic Analysis and Classification of Novel Species Flavobacterium gabrieli KJJ

  • Jesse Clayton, Devin Frantz, Jordan Krebs & Jeffrey D. Newman
        Reinstatement of the genus Kaistella within the Flavobacteriaceae.
  • 4th International Conference on Flavobacterium – October 27, 2015

  • Jeff Newman
        Phylogenomic Analysis of the Flavobacteriaceae

  • ASM 2015 – New Orleans May 30-June 2, 2015

  • Bayly Anderson & Jeff Newman
        The Identification of a Novel Pedobacter Species.

  • Samantha Stropko, Shannon Pipes & Jeff Newman
        Characterization of Novel Bacillus Species and Reclassification of Bacillus cibi as Later Heterotypic Synonym of Bacillus indicus.

  • Jacob Miller, Abigail Smith & Jeff Newman
        Genomic and Phenotypic Analysis of Two Novel Flavobacterium Isolates from a Freshwater Creek

  • Shannon Pipes & Jeff Newman
        Genome Sequence Analysis of Largemouth Bass Virus Isolates from Smallmouth Bass

  • Miranda Giraldo, Hannah Morrissette & Jeff Newman
        Identification and Analysis of Bacteria Isolated from Smallmouth Bass Lesions

  • Andrew Gale & Jeff Newman
        Reclassification within the Genus Flavobacterium.

  • Trustee Dinner – September 16, 2014

  • Shannon Pipes, Samantha Stropko & Jeff Newman
        LycoMicro & Genomics Research

  • ASM 2014 – Boston May 17-May 20, 2014

  • Ashley B. Gimbel & Jeff Newman
        Classification and Identification of Flavobacterium douthatii ABG sp. nov.

  • Samantha J. Stropko & Jeff Newman
        Characterization and Identification of Lycobacillus colbertis SJS gen. nov. sp. nov.

  • Thomas Sontag & Jeff Newman
        Chryseobacterium haifense DSM 19056T , A Genomic Report.

  • Kyle Swovick & Jeff Newman
        Flavobacterium succinicans LMG 10402: A Genome Report

  • Victoria L. Bortniak & Jeff Newman
        Characterization of Chryseobacterium populense CF314 sp. nov.

  • Jeff Newman
        2013-2014 Allegheny Branch Activities

  • ASMCUE – Boston May 14-May 17, 2014

  • Jeff Newman
        Microbial Genome Sequencing with GCAT-SEEK

  • Penn State – 2013

  • Jordan Krebs, Andrew Gale, Thomas Sontag, Victoria Keyser, Jeff Newman
        Average‐Nucleotide Identity Bi‐Directional Best Hit (ANIBBH): A Novel Genomic‐Based Method to Differentiate Bacterial Species

  • University of Maryland Baltimore County(UMBC) – 2013

  • J.A. Hoffman, D.N. Henry, S.M. Villani, & K.D. Cox
        Detection of the G143A Mutation in New York Populations of Podospaera leucotrichaand its Significance in Qol Practical Resistance
  • Samantha Stropko & Jeff Newman
        Characterization and Identification of Bacillus colbertis SJS sp. nov.
  • Victoria Bortniak & Jeff Newman
        Characterization of Chryseobacterium populense CF314 sp nov
  • Andrew Gale, Jordan Krebs, Thomas Sontag, Victoria Keyser, Eileen Peluso & Jeff Newman
        A web-based method to calculate average amino acid identity (AAI) between prokaryotic genomes.
  • Ellen Confer, Jing Bi, Jessica Ouderkirk, & Mira Krendel
        Kidney Disease Associated Mutation (T119I) Alters Myosin 1e Intracellular Localization

  • Pennsylvania Academy of Science(PAS) – 2013

  • Jordan Krebs, Andrew Gale, Jeff Newman
        Purification of Flexirubin Pigments from Chryseobacterium
  • Thomas Sontag
        The Assembly and Annotation of the Chryseobacterium haifense Genome

  • ASM – Denver May 18 - 21, 2013

  • Jordan Krebs, Andrew Gale, & Jeff Newman
        Purification of Flexirubin Pigments from Chryseobacterium
  • Jordan Krebs, Andrew Gale, & Jeff Newman
        Purification of Flexirubin Pigments from Chryseobacterium
  • Jordan Krebs & Jeff Newman
        Student Perspectives on the Use of Biolog GenIII Plates in Undergraduate Research and a General Microbiology Course

  • University of Maryland Baltimore County(UMBC) – 2012

  • Jessica Hoffman, Clark Thompson, & Jeff Newman
        Characterization of Epilithonimonas Sp. Fh1. from a Freshwater Creek
  • Jordan Krebs, Dave Sampsell, Chriss McDonald, & Jeff Newman
        Purification and Molecular Structure Determination of Flexirubins from Chryseobacteria
  • Timothy Hostelley & Jeff Newman
        Sequencing, Assembling, and Annotating the Kaistella koreensis Genome
  • Thomas Sontag, Jordan Krebs, & Jeff Newman
        De Novo Assembly of the Chryseobacterium haifense Genome

  • Pennsylvania Academy of Science(PAS) – 2012

  • Jordan Krebs, Thomas Sontag, & Jeff Newman
        Genome Sequencing of Lycomia zaccaria gen. nov. sp. nov., Chryseobacterium haifense, and Kaistella koreensis and Comparison to Two Closely Related Genomes

  • Allegheny Branch of the ASM(ABASM) – 2012

  • Jordan Krebs, Timothy Hostelley, Thomas Sontag, & Jeff Newman
        Assembly and Annotation Strategies for Three Microbial Genomes Sequenced Through the Genome Consortium for Active Teaching – NextGen Sequencing Group (GCAT‐SEEK)

  • ASM – New Orleans 2011

  • Kristen Collins, Jordan Krebs, Karen Kirk, Katherine Smith, Trisha Duncan, KC Failor, & Jeff Newman
        Characterization of Novel Bacterial Species Identified by Undergraduate Students in a General Microbiology Course
  • KC Failor, & Jeff Newman
        Multilocus Sequence Analysis in the Genus Chryseobacterium

  • Allegheny Branch of the ASM(ABASM) – 2011

  • Jeff Newman
        Incorporating research into the curriculum: NextGen sequence data in the General Biology (Freshmen!) and Molecular Biology laboratories

  • ASM – San Diego 2010

  • Damian Mariano, Alicia Schueck, KC Failor, & Jeff Newman
        Analysis of Two Potentially Novel Yersinia Species from Pennsylvania Creeks
  • Jeff Newman
        The Effect of Hands‐On Experience with Microbial Identification Technologies on Student Understanding of These Methodologies

  • Allegheny Branch of the ASM(ABASM) – 2010

  • Jordan Krebs, KC Failor, Tyler Marcinko, & Jeff Newman
        Molecular and Phenotypic Characteristics of a Novel Species and Related Type Strains Suggest a Reorganization within the Genus Chryseobacterium
  • KC Failor, & Jeff Newman
        Characterization of the Flavobacteriaceae using Multilocus Sequence Typing

  • Allegheny Branch of the ASM(ABASM) – 2009

  • Kristen Collins, Allison Batties, Tyler Hoffman, & Jeff Newman
        A Survey of Culturable Microbial Diversity from the Lycoming Creek
  • Tyler Hoffman, Kristen Collins, & Jeff Newman
        Phenotypic Characteristics of Microbes from a Freshwater Creek

  • ASM – Boston 2008

  • Brittane Strahan, Jessica Bennett, Allison Batties, Kristen Collins, & Jeff Newman
        Analysis of the Microbial Community in a Wastewater Sequencing Batch Reactor at Two Time Points Using Both Culture Dependent and Independent Methods
  • Tyler Marcinko, & Jeff Newman
        Identification and Characterization of Sejongia lycomia sp. nov., a Unique Isolate from Loyalsock Creek
  • Brittane Strahan, Allison Batties, & Jeff Newman
        Analysis of the Microbial Community in a Wastewater Sequencing Batch Reactor at Two Time Points Using Both Culture Dependent and Independent Methods

  • University of Maryland Baltimore County(UMBC) – 2007

  • Allison Batties, Jessica Bennett, & Jeff Newman
        Evolution of the Purine Biosynthetic Enzyme, Formylglycinamide Ribonucleotide Amidotransferase (FGARAT)
  • Britanne Strahan, & Jeff Newman
        Analysis of the Microbial Community in a Wastewater Sequencing Batch Reactor

  • Pennsylvania Academy of Science(PAS) – 2007

  • Brittane Miller, & Jeff Newman
        Comparisons of Microbial Communities in a Sequencing Batch Reactor (Cromaglass® Corporation) at Two Time Increments
  • Britanne Miller, & Jeff Newman
        Comparisons of Microbial Communities in a Sequencing Batch Reactor (Cromaglass® Corporation) at Various Time Increments

  • ASM – Toronto 2007

  • Brittane Miller, & Jeff Newman
        Analysis of the Microbial Community in a Wastewater Sequencing Batch Reactor
  • Kellie Cicconi, Justin Martin, Patrick Hayes, & Jeff Newman
        Initial Characterization of Novel Bacterial Species from the Loyalsock Creek in North Central Pennsylvania
  • Elizabeth Sehi, Jessica Bennett, Alison Batties, & Jeff Newman
        Identification of a Novel Heterodimeric Form of the Purine Biosynthetic Enzyme, Formylglycinamide Ribonucleotide Amidotransferase (FGARAT).
  • Jeff Newman
        Creek Sediments as a Rich Source of BioSafety Level-1 Organisms for Use as Unknowns in an Undergraduate Microbiology Laboratory
  • Brittane Miller, & Jeff Newman
        Abstract
  • Britanne Miller, & Jeff Newman
        Analysis of the Microbial Community in a Wastewater Sequencing Batch Reactor

  • Research Methods – 2007

  • Tyler M. Marcinko and Jeffrey D. Newman
        Identification and Characterization of Sejongia lycomia sp. nov., a Unique Isolate from Loyalsock Creek

  • University of Maryland Baltimore County(UMBC) – 2004

  • Andrew Lutzkanin, & Jeff Newman
        The Amplification and Cloning of Staphylococcus aureus purD
  • Erica Walsh, & Jeff Newman
        Cloning and Expression of a cDNA for a Human Purine Biosynthetic Enzyme
  • Elizabeth Sehi, & Jeff Newman
        Evolutionary Analysis of the Purine Biosynthetic Enzyme, FGAR Aminotransferase

  • Drexel University – May 7,1998

  • Jeff Newman
        FGAR Amidotransferase: A Purine Biosynthetic Enzyme with Potential as a Target for Antimicrobial Drugs.

  • Pennsylvania Academy of Science(PAS) – 1998

  • Matthew Georgy
        The Construction of Blue Fluorescent Protein
  • Mark McCleland
        Mutagenesis and Expression of Mammalian Clotting Factor IX